I'm certainly not an old hand at this, but I'll throw in my two cents.
I can't come up with any specific examples, but the Dresden Files is one series where this happens a bit. Something will happen, some information will drop, and neither the protagonist nor the reader will know what to make of it. Then at the story's climax, Harry speechifies what he figured out from said clues (He's not a cripple!), and it magnifies the reader's interest in the climax because the reader didn't put it together himself.
I wonder, the clues that you say you have planned out, are these only redeemable at story's end? I think the reader stays more engaged when there's a kind of intercourse going on throughout the book, but that's just me. I suggest finding yourself someone experienced to proof what you have, and talk to them about what exactly you want to accomplish with your 'clues' (that can mean so many things). It seems like one of those things that can't be understood unless they're in context.
Good luck, though. Let us know how things turn out.
*Edit: Typo. I don't have thumbs.
**Edit Edit: I also sometimes forget to use conjunctions.